
Why You’ll Love This Recipe
These Chocolate Cheesecake Cupcakes are the ultimate combination of creamy and chocolatey goodness. The rich chocolate cupcake base is topped with a velvety, tangy cheesecake filling, creating a mouthwatering treat that’s both satisfying and delicious. These cupcakes are easy to make and perfect for portion control, allowing you to enjoy a sweet indulgence without any fuss. Plus, they’re highly customizable, so you can add a variety of toppings or mix-ins to make them your own.
Ingredients
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For the chocolate cupcake base:
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1 1/2 cups all-purpose flour
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1 cup granulated sugar
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1/2 cup unsweetened cocoa powder
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1 teaspoon baking powder
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1/2 teaspoon baking soda
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1/2 teaspoon salt
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2 large eggs
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1 cup milk
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1/2 cup vegetable oil
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1 teaspoon vanilla extract
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1/2 cup boiling water
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For the cheesecake filling:
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8 oz cream cheese, softened
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1/4 cup granulated sugar
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1 teaspoon vanilla extract
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1 large egg
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1/2 cup sour cream
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(Tip: You’ll find the full list of ingredients and measurements in the recipe card below.)
Directions
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Prepare the chocolate cupcake base:
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Preheat your oven to 350°F (175°C) and line a 12-cup muffin tin with cupcake liners.
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In a large bowl, whisk together the flour, sugar, cocoa powder, baking powder, baking soda, and salt.
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Add the eggs, milk, oil, and vanilla extract, and mix until the batter is smooth.
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Gradually add the boiling water to the batter, mixing until well combined (the batter will be thin, which is normal).
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Divide the batter evenly between the 12 cupcake liners, filling each about halfway full.
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Bake for 18-20 minutes, or until a toothpick inserted into the center comes out clean. Remove from the oven and let the cupcakes cool in the tin for 10 minutes before transferring them to a wire rack to cool completely.
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Prepare the cheesecake filling:
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In a medium bowl, beat the cream cheese and sugar together until smooth and creamy.
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Add the egg, vanilla extract, and sour cream, and beat until well combined.
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Assemble the cupcakes:
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Once the cupcakes have cooled, use a small spoon or melon baller to make a small indentation in the center of each cupcake.
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Spoon or pipe the cheesecake filling into each cupcake, filling the indentation to the top.
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Bake the cupcakes for an additional 12-15 minutes, or until the cheesecake filling is set and the tops are slightly golden.
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Cool and serve:
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Let the cupcakes cool in the tin for 10 minutes before transferring them to a wire rack to cool completely.
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Once cooled, you can garnish with chocolate chips, whipped cream, or fruit if desired.
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Serve and enjoy!
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Servings and Timing
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Servings: 12 cupcakes
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Prep time: 15 minutes
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Cook time: 30-35 minutes
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Total time: 45-50 minutes
Variations
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Chocolate Ganache Topping: Top the cooled cupcakes with a rich layer of chocolate ganache for extra decadence.
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Fruit Topping: Add fresh berries such as raspberries or strawberries on top for a refreshing contrast to the rich chocolate and cheesecake.
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Mini Cheesecake Cupcakes: If you prefer a more bite-sized version, bake the cupcakes in mini muffin tins for a smaller portion that’s perfect for snacking.
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Flavored Cheesecake Filling: Experiment with different flavorings like almond extract or citrus zest in the cheesecake filling for a unique twist.
Storage/Reheating
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Storage: Store these cupcakes in an airtight container in the refrigerator for up to 3-4 days. The cheesecake filling requires refrigeration to keep its texture.
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Reheating: If you prefer your cupcakes warm, you can microwave them for 10-15 seconds to soften the cheesecake filling and warm the chocolate cupcake base.
FAQs
1. Can I make the chocolate cupcake base ahead of time?
Yes, you can prepare the chocolate cupcakes in advance and store them in an airtight container at room temperature for up to 2 days, or refrigerate them for up to 5 days.
2. Can I freeze these cupcakes?
Yes! You can freeze the cooled cupcakes (without the cheesecake filling) for up to 3 months. When ready to serve, thaw them and top with the cheesecake filling before baking.
3. Can I use a different type of frosting instead of the cheesecake filling?
Yes! You can substitute the cheesecake filling with chocolate buttercream frosting or whipped cream if you prefer a different topping.
4. Can I make these cupcakes gluten-free?
Yes, you can use a gluten-free flour blend in place of all-purpose flour to make these cupcakes gluten-free. Make sure to check the rest of the ingredients for gluten content if you are baking for someone with a gluten sensitivity.
5. How can I make the cheesecake filling less sweet?
If you prefer a less sweet cheesecake filling, you can reduce the amount of sugar in the filling by 2 tablespoons, or use a sugar substitute that works in baked goods.
6. Can I add mix-ins to the cheesecake filling?
Absolutely! You can fold in mini chocolate chips or crushed cookies like Oreos into the cheesecake filling for added texture and flavor.
7. How do I know when the cheesecake filling is done?
The cheesecake filling is done when it has set and the top is slightly golden. If you gently tap the side of the cupcake, it should not jiggle excessively.
8. Can I make these cupcakes without the sour cream?
Yes, you can substitute sour cream with Greek yogurt for a similar tangy flavor and creamy texture.
9. Can I make the cupcake base with cake mix?
Yes, you can substitute the homemade cupcake base with a box cake mix. Just follow the instructions on the box and bake as directed before adding the cheesecake filling.
10. How can I make these cupcakes more chocolatey?
For an extra chocolatey flavor, you can add chocolate chips to the cupcake batter, or swirl in melted chocolate into the cheesecake filling.
Conclusion
These Chocolate Cheesecake Cupcakes are the perfect combination of creamy, tangy cheesecake and rich, indulgent chocolate. They’re easy to make and the perfect dessert for any occasion. Whether you’re baking for a special celebration or just looking to treat yourself, these cupcakes will surely be a hit. With their decadent flavor and customizable options, they’re a dessert you’ll want to make again and again!

Chocolate Cheesecake Cupcakes
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- Author: Ava
- Total Time: 45-50 minutes
- Yield: 12 cupcakes
- Diet: Vegetarian
Description
These Chocolate Cheesecake Cupcakes combine the creamy, tangy goodness of cheesecake with a rich, chocolate cupcake base, creating the perfect bite-sized dessert. They’re easy to make, highly customizable, and perfect for any occasion, from parties to casual desserts.
Ingredients
- 1 1/2 cups all-purpose flour
1 cup granulated sugar
1/2 cup unsweetened cocoa powder
1 teaspoon baking powder
1/2 teaspoon baking soda
1/2 teaspoon salt
2 large eggs
1 cup milk
1/2 cup vegetable oil
1 teaspoon vanilla extract
1/2 cup boiling water
8 oz cream cheese, softened
1/4 cup granulated sugar
1 teaspoon vanilla extract
1 large egg
1/2 cup sour cream
Instructions
Preheat your oven to 350°F (175°C) and line a 12-cup muffin tin with cupcake liners.
- Prepare the chocolate cupcake base: In a large bowl, whisk together the flour, sugar, cocoa powder, baking powder, baking soda, and salt.
- Add the eggs, milk, oil, and vanilla extract, and mix until the batter is smooth.
- Gradually add the boiling water to the batter, mixing until well combined. (The batter will be thin, which is normal.)
- Divide the batter evenly between the 12 cupcake liners, filling each about halfway full.
- Bake for 18-20 minutes, or until a toothpick inserted into the center comes out clean. Let the cupcakes cool in the tin for 10 minutes before transferring them to a wire rack to cool completely.
- Prepare the cheesecake filling: In a medium bowl, beat the cream cheese and sugar together until smooth and creamy.
- Add the egg, vanilla extract, and sour cream, and beat until well combined.
- Once the cupcakes have cooled, use a small spoon or melon baller to make a small indentation in the center of each cupcake.
- Spoon or pipe the cheesecake filling into each cupcake, filling the indentation to the top.
- Bake the cupcakes for an additional 12-15 minutes, or until the cheesecake filling is set and the tops are slightly golden.
- Cool in the tin for 10 minutes before transferring to a wire rack to cool completely.
- Once cooled, you can garnish with chocolate chips, whipped cream, or fruit if desired. Serve and enjoy!
Notes
- If you prefer a more indulgent treat, top the cooled cupcakes with chocolate ganache or whipped cream.
- For a fruity twist, top with fresh berries like raspberries or strawberries.
- These cupcakes can be made ahead of time and stored in an airtight container in the fridge.
- Prep Time: 15 minutes
- Cook Time: 30-35 minutes
- Category: Dessert
- Method: Baking
- Cuisine: American
Nutrition
- Serving Size: 1 cupcake
- Calories: 320
- Sugar: 28g
- Sodium: 120mg
- Fat: 20g
- Saturated Fat: 9g
- Unsaturated Fat: 7g
- Trans Fat: 0g
- Carbohydrates: 34g
- Fiber: 3g
- Protein: 4g
- Cholesterol: 55mg